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R Cannot Find Xml2-config

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Installing Bioconductor version 2.6 packages: [1] "GeneRfold" Please wait... Not the answer you're looking for? Shi, Tao Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: XML package installation -- an old question Hi Duncan, Thank you gcc > checking for C compiler default output file name... this content

gcc > checking for C compiler default output file name... more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed After looking through the old posts I checked all the necessary libraries and they all seem to be properly installed (see below). On 1941 Dec 7, could Japan have destroyed the Panama Canal instead of Pearl Harbor in a surprise attack?

Error: Configuration Failed For Package ‘rcurl’

rMAT install error I want to install rMAT_3.12.0, after setup gsl-1.16 and AMD BLAS(acml),I still got error,the mess... After an R update and the installation ... no > checking for suffix of executables... > checking for suffix of object files... yes > checking for gcc option to accept ISO C89...

Once installed run your configure, compile, or install script again and you should not receive the same error message. yes > checking whether gcc accepts -g... gcc -E No ability to remove finalizers on externalptr objects in this verison of R checking for sed... /bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... Error: Please Install Xml2 Package yes checking for gcc option to accept ISO C89...

Checking for update. Cannot Find Xml2-config Centos Less commonly, packages may install but then fail to load, as here with the Rsamtools package: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/local/lib64/R/library/Rsamtools/libs/Rsamtools.so': /usr/local/lib64/R/library/Rsamtools/libs/Rsamtools.so: yes checking whether gcc accepts -g... http://stackoverflow.com/questions/20671814/non-zero-exit-status-r-3-0-1-xml-and-rcurl I have problems installi...

bioc package installation problem Hi, I can't install ShortRead package. Libxml2 R Does Intel sell CPUs in ribbons? yes checking whether gcc accepts -g... It will often be necessary to understand your system more thoroughly than you’d like, perhaps with the assistance of the Bioconductor support site.

Cannot Find Xml2-config Centos

rm: cannot remove `a.out.dSYM': Is a directory a.out checking whether the C compiler works... my review here checking for suffix of object files... Error: Configuration Failed For Package ‘rcurl’ yes checking whether we are cross compiling... How To Install Xml Package In R How can I fix this problem? > install.packages() Loading Tcl/Tk interface ...

This could be important if you are using the LTS version of ubuntu. news I am trying to install Biomart, what I realize is that s... Help, please! > > Many thanks! > > Tao > > > > ================================================== > > [root ~]# yum install libxml2 > Setting up Install Process > Package matching libxml2-2.7.6-8.el6_3.3.x86_64 already See also askubuntu.com/a/428379/17060 –michael_n Jun 17 at 8:08 add a comment| up vote 21 down vote In CentOS 6+ you can do it using sudo yum -y install curl sudo yum Installation Of Package ‘rcurl’ Had Non-zero Exit Status

I am trying to use rattle for R. o checking whether we are using the GNU C compiler... Grateful if you could help. have a peek at these guys share|improve this answer answered Oct 14 '11 at 14:20 Dirk Eddelbuettel 209k23384485 add a comment| Not the answer you're looking for?

checking for gcc... R-cran-xml Given the hints solve the puzzle When does TNG take place in relation to DS9? gcc -E > checking for sed... /bin/sed > checking for pkg-config... /usr/bin/pkg-config > checking for xml2-config...

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a.out checking whether the C compiler works... Be sure that your installed packages are up-to-date by following update packages. no Cannot find xml2-config ERROR: configuration failed for package \u2018XML\u2019 * removing \u2018/usr/lib64/R/library/XML\u2019 The downloaded source packages are in     \u2018/tmp/RtmpwnAIFH/downloaded_packages\u2019 Updating HTML index of packages in '.Library' Making 'packages.html' ... Installation Of Package ‘xml2’ Had Non-zero Exit Status Error:configure: error: cannot find xml2-config The package that includes xml2-config is libxml2-devel which can be installed via yum using the syntax below.

Install libcurl4: 1 sudo apt-get install libcurl4-openssl-dev And then re-install the RCurl package. This usually occurs because the package relies on additional software that is not available for the operating system. bash [[email protected] istat-0.5.3]# yum install libxml2-devel Loading "fastestmirror" plugin Loading mirror speeds from cached hostfile Setting up Install Process Parsing package install arguments Resolving Dependencies --> Running transaction check ---> Package http://rss4medics.com/cannot-find/pecl-cannot-find-config-m4-apd.php gcc > checking for C compiler default output file name...