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Rapidminer Cannot Find System Renviron

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we >> have it now sucessfully running on 2.15.1! M. the program using RInside header was compiled on server which has r installed from ubuntu repository. Try that." So having rpy2 > not support these versions is a really big barrier to using it. http://rss4medics.com/cannot-find/python-the-system-cannot-find-the-path-specified.php

However running update.packages() gives me a bunch of these:Warning: package 'MASS' in library '/Library/Frameworks/R.framework/Versions/2.15/Resources/library' will not be updatedSo it's not updating the packages in the other libraries. Ohri Look Inside Get Access Chapter Pages 225-240 Clustering and Data Segmentation A. Have you come across this?ReplyDeleteRepliesl2nJuly 12, 2012 at 5:33 AMHi nzcoops,I just tried this and I have core packages installed in /Library/Frameworks/R.framework/Versions/2.15/Resources/library and it worked. When I import rpy2 it works fine, but when I try to run tests or > anything else : get: > > >>> import rpy2 > >>> rpy2.__path__ > ['/local/lib/python2.6/site-packages/rpy2'] >

Cannot Find System Renviron Rpy2

Reply Arulraj Anto says: June 13, 2016 at 9:27 am [[email protected] lib]# export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/R-2.15.2/lib64/R/lib/ [[email protected] lib]# python Python 2.7.11 (default, Apr 7 2016, 19:08:08) [GCC 4.4.7 20120313 (Red Hat 4.4.7-16)] on we had it installed in /sw/bin/R2.15.0 >> but the Renviron file was in /sw/bin/R2.15.0/lib64/R. Venables, D.

We use cookies to improve your experience with our site. As a monk, can I use Deflect Missiles to protect my ally? Attempting to >> build rpy2 against R 2.16 (the development version) gives build errors. >> >> Nick >> >> On 25 July 2012 10:07, Laurent Gautier wrote: >> >>> On R_home or at least they did until we >> realised that path for R was wrong.

R supports a wide range of statistical techniques and is easily extens... Cannot Find System Renviron Mac A google search on "LookupError: 'show' not found" returns the following as the first suggestion here: https://bitbucket.org/lgautier/rpy2/issue/46/lookuperror-show-not-found > > Unfortunately every time I/we come across an issue with an R package, Are >>> there plans to try and make rpy2 2.15/devel compatible? >> >> May be after your sort out your local install ? >> ;-) >> >> >> L. >> >> Bookmark the permalink. ← Python header Python: pip installation → 3 Responses to R warnings when starting rpy2 and installation Arulraj Anto says: June 13, 2016 at 9:01 am [[email protected] ~]#

Discussions >>> will include endpoint security, mobile security and the latest in malware >>> threats. We compiled > rpy2 against R 2.15.0 and 2.15.1 and it still gives this error > both times. I would look to me like >>> there is further mix-up on your system. >>> >>> A google search on "LookupError: 'show' not found" returns the following >>> as the first Showing results for  Search instead for  Did you mean:  Community Home : Product Help : Studio Forum : Can not install R - extension with R 2.13.0 Topic Options Subscribe to

Cannot Find System Renviron Mac

Are > there plans to try and make rpy2 2.15/devel compatible? I checked what is new for R-2.16-to-be-released, and there is potentially trouble ahead for the current rpy2 code base (see below). Cannot Find System Renviron Rpy2 Will set this up :)ReplyDeletevonjdJune 29, 2012 at 2:49 AMis there also a solution for Windows?ReplyDeleteRepliesAnonymousAugust 12, 2012 at 11:06 PMAfter installing a new version of R on Windows, I just R Fatal Error: Unable To Open The Base Package When I import rpy2 it >>> works fine, but when I try to run tests or anything >>> else : get: >>> >>> >>> import rpy2 >>> >>> rpy2.__path__ >>> ['/local/lib/python2.6/site-packages/rpy2']

When I import rpy2 it works fine, but when I try to >> run tests or anything else : get: >> >> >>> import rpy2 >> >>> rpy2.__path__ >> ['/local/lib/python2.6/site-packages/rpy2'] >> http://rss4medics.com/cannot-find/psexec-the-system-cannot-find-the-file-specified-c.php I would >> look to me like there is further mix-up on your system. >> >> A google search on "LookupError: 'show' not found" >> returns the following as the first Something that has frustrated me in the past but given it's an irregular occurence I haven't hunted out a solution. It should not segfault thought. Cannot Find System Renviron Java

Just rebuild on machine two, or just identical layouts (and even in that case I recommend packages -- we do have r-cran-rinside as well). Are you sure you want to continue?CANCELOKWe've moved you to where you read on your other device.Get the full title to continueGet the full title to continue reading from where you Attempting to build rpy2 against R 2.16 (the development version) gives build errors. have a peek at these guys If the C-API for R did not change it should > mostly be ok. > Let us know if there is an issue (the bug tracker on bitbucket can be >

or at least they did until we >>> realised that path for R was wrong. When I import rpy2 it works fine, but when I try to run tests or >> anything else : get: >> >> >>> import rpy2 >> >>> rpy2.__path__ >> ['/local/lib/python2.6/site-packages/rpy2'] >> This is very useful advice indeed!ReplyDeleteMike RutterJune 28, 2012 at 6:42 PMWhat operating system are you using and how are you updating R?

We compiled rpy2 against R 2.15.0 and 2.15.1 and it still gives this error both times.

Try that." So having rpy2 not support >> these versions is a really big barrier to using it. Try that." So having rpy2 not support > these versions is a really big barrier to using it. or at least they >> did until we realised that path for R was wrong. Privacy Policy, Disclaimer, General Terms & Conditions Not logged in Unaffiliated 165.231.164.242 Springer for Research & Development UA-26408784-1 JavaScript is currently disabled, this site works much better if you enable JavaScript

However, I will post it here for future reference. Setting R_HOME to >>> this has sorted it. >>> >>> Now I have the entirely different issue of rpy2 not working with R2.15 >>> (ignore the 2.11 typo I stuck in All Rights Reserved. check my blog we have it now sucessfully running on 2.15.1!

Are there plans to try > and make rpy2 2.15/devel compatible? > > > May be after your sort out your local install ? > ;-) > > > L. > Are there plans to try >> and make rpy2 2.15/devel compatible? >> >> >> May be after your sort out your local install ? >> ;-) >> >> >> L. >> more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed stale ldconf settings were the issue.

Teenage daughter refusing to go to school Wrong way on a bike lane? You can also update Bioconductor package as follows (this probably works with newer versions of Bioconductor): source("http://bioconductor.org/biocLite.R") biocLite("BiocUpgrade") EDIT: see here for setting environmentvariables in Windows http://cran.r-project.org/bin/windows/base/rw-FAQ.html#How-do-I-set-environment-variables_003f Posted by altuna at Attempting to build rpy2 against R 2.16 (the > development version) gives build errors. > > Nick > > On 25 July 2012 10:07, Laurent Gautier > wrote: > Plotting differentially methylated bases on an ideogram Calling BEDtools from R Labels R (34) methylKit (10) unix (8) methylation (7) recipe (6) genomation (5) sequencing (5) bash (4) RNASeq (2) UCSC